rs30512519 SNP Detail

Summary

• ID
  rs30512519
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAACTGG ACATTTTGGT
  CTCCAGTTTT ACTTAAAATT ACAACACATC CCTGTGTTGT GGAAATTCCT TTGAACTCTG
  AAGAACTGCA CCCTGCTTCG CCGAGGAAGT GAACACCAGC TGGTTATTTT ATAGGGTTGC
  ATGCATCTTT CTGTTAACTT GTGCCCTTTA CTGCGGAAGA TAATAGATAG AACTGAAAGC
  W
  CACCTTTGTA AAGTGTTTCA GACTTCTGGG TCTTAGGTAG GATTCACCTA GGAGGAGAAG
  TCCTGAGACA CAGAGTTAAG TGTTTTCAGA ATTCTTTGTC ACGTTGCTTC CTGGAGGCTT
  TGTCCATTTC CACTGAGGAC ATTTAATTAC AGTATGATAC CTAAATTGAA TTTTGAAGAA
  CTACATTCTA ACTTTCAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955629	NES10677969	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	T	A	A	A		T	A	A	T		A
ss135837052	ENSMUSSNP7143641	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
ss320946677	CHEV_3_126314185	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30512519					SNP	T	T	A	T	A	T	A	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955629	NES10677969	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1859 bp upstream
Rr584652	regulatory region 584652			1870 bp distal
Rr584653	regulatory region 584653			1369 bp distal
Rr584654	regulatory region 584654			48 bp distal
Rr584655	regulatory region 584655			210 bp proximal
Rr584656	regulatory region 584656			1431 bp proximal
Tssr35522	transcription start site region 35522			595 bp downstream