rs30512515 SNP Detail

Summary

• ID
  rs30512515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCCCT CCCAGCTGGC
  CCCTGCCTTT CCCCCTAACC TACCTACTTC CTTGGCTGCC CACTCCCTCT TTCTCTCTTT
  CAAACTGGAC ATTTTGGTCT CCAGTTTTAC TTAAAATTAC AACACATCCC TGTGTTGTGG
  AAATTCCTTT GAACTCTGAA GAACTGCACC CTGCTTCGCC GAGGAAGTGA ACACCAGCTG
  R
  TTATTTTATA GGGTTGCATG CATCTTTCTG TTAACTTGTG CCCTTTACTG CGGAAGATAA
  TAGATAGAAC TGAAAGCACA CCTTTGTAAA GTGTTTCAGA CTTCTGGGTC TTAGGTAGGA
  TTCACCTAGG AGGAGAAGTC CTGAGACACA GAGTTAAGTG TTTTCAGAAT TCTTTGTCAC
  GTTGCTTCCT GGAGGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955625	NES10677967	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	G	G	G		A	G	G	A		G
ss135837049	ENSMUSSNP4300962	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss320946676	CHEV_3_126314107	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30512515					SNP	A	A	G	A	G	A	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955625	NES10677967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1781 bp upstream
Rr584652	regulatory region 584652			1792 bp distal
Rr584653	regulatory region 584653			1291 bp distal
Rr584654	regulatory region 584654			within coordinates
Rr584655	regulatory region 584655			288 bp proximal
Rr584656	regulatory region 584656			1509 bp proximal
Tssr35522	transcription start site region 35522			673 bp downstream