rs30512243 SNP Detail

Summary

• ID
  rs30512243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87702787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TAAAACAGCT GCATTTTCAG
  R
  TTTGCGGGGA AGTGGAGAAA TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45438906	mCV23486602	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135468215	ENSMUSSNP3425285	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30512243					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87702787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	within coordinates
Cpgi13340	CpG island 13340	1331 bp proximal
Insrr	insulin receptor-related receptor	1471 bp upstream
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	318 bp upstream
Rr579548	regulatory region 579548	within coordinates
Rr579549	regulatory region 579549	211 bp distal
Rr579550	regulatory region 579550	261 bp proximal
Rr579551	regulatory region 579551	981 bp proximal
Tssr29830	transcription start site region 29830	1409 bp upstream
Tssr29831	transcription start site region 29831	1458 bp upstream
Tssr33956	transcription start site region 33956	258 bp upstream