rs30510709 SNP Detail

Summary

• ID
  rs30510709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126392642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGCAAA AAAGAGTGGT
  CATAATTGGC ATTACCTTCT ATTTTGTTGA TTAATAATCT GCGTGTTTCC AGTCAATTAA
  AAACGACTTT CATTCCACAA CATTAAAAAA GATCTGGGCT GGCAGGAAAG AATTGTTTAT
  TTTCTAGATA ATGCTTTTAT TATGTTGCTA TTTGACAGAC CACTAAAGGT TCATGAAACC
  R
  CTCAGATTTG TGAGTTTGCA AGTGGATACT AGATCTGATT ATACTGACGA CTTGCTAATT
  ATTGGTTTCC AGGGGGGCGT TCTCAGTGGT GAGAAGATGT ATGAAAATCC CTACTGGACA
  AGAGTATGCT GCCAAAATTA TCAACACCAA AAAGCTTTCT GCTAGGGGTG GGTATTTTAA
  ACCACATTTA TTTATATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955409	NES10678792	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G	G	G	G		A	G	G	A		G
ss135836868	ENSMUSSNP2668819	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320946594	CHEV_3_126301911	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30510709					SNP	A	A	A	G	A	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955409	NES10678792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126392642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			939 bp distal
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1036 bp upstream
Rr397994	regulatory region 397994			293 bp upstream
Rr584646	regulatory region 584646			1569 bp distal
Rr584648	regulatory region 584648			1974 bp distal
Rr584649	regulatory region 584649			234 bp distal
Rr584650	regulatory region 584650			369 bp proximal
Tssr31571	transcription start site region 31571			1955 bp downstream
Tssr31572	transcription start site region 31572			1880 bp downstream
Tssr31573	transcription start site region 31573			1739 bp downstream
Tssr31574	transcription start site region 31574			1580 bp downstream
Tssr31575	transcription start site region 31575			1558 bp downstream