rs30510535 SNP Detail

Summary

• ID
  rs30510535
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18419162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTACAC TTTCCATTTT
  GGTTTCCTAA AATATTGTAT ACTGTACACT ATGGTATTCC ATTAAAATGC TACCTACATA
  TCAGTTCTTA GAATTTTCCT TCCCTTTGAG TTAAAGAGTA ACCGGAAGGG AAATGTAAGC
  TAACCAGCCC CAAATAAATG GCGCTTTTCT CTTCTCTCTC TTTTTGAAAA TCGAACTGTG
  M
  AGGACACAGT GTCTGTCACA GACCTAATAG TTTCCAACAG GTATTTCCAT CTGGAAAGAA
  TGAGTCTCGT GCTTCATTCC AGGATAACTC AAACCACCAG CTATCTCACT AATCAATGCT
  TTTTCCTTGC TCTTCCTGCA AAACAGTATC TTTCCATTCA GGTCTACTCC TTTCCCGTGC
  TTATTCTGTG TTCTATCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45937486	mCV23959670	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss133034562	ENSMUSSNP2706689	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30510535					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18419162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			within coordinates
Rr626921	regulatory region 626921			759 bp distal