rs30509873 SNP Detail

Summary

• ID
  rs30509873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126392233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGC
  TGTAGGTTTC CTTACAGTTG CATAAAAGGA AGTGTGAGCA CTTTTAAATC AAATGAAAAT
  GATATCTTTA TAGATGATCT GCTGTTGAAA CATGGAGTAT GTCGGAAGAG CAGCTTAATT
  TAAATCTCTC CCCTCCCCCC AAGCCCAAAC CAGGCAGAGA GAAATCACCT TACCCCAGAA
  Y
  CTGTTAAAGC ACACCAGTGA GCTCGAGATT TATGTTTTAA TGAAAACAAT CGCCATATTT
  ACTTAGTTGG AACCACGTTA ATTATGTTTC CTACCGAAAT AAACAGTTTT TTTTTTTTTT
  TCTTCTGTTC CCCAGCTCGG TCCTTTGCAG GGTTTGCTAT GAGCATTTGG TGTTTTGTGA
  GTGTGAATTA CAAATTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955403	NES10678789	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	C	C	C		T	C	C	T		C
ss135836859	ENSMUSSNP5595717	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss320946590	CHEV_3_126301502	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30509873					SNP	T	T	T	C	T	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955403	NES10678789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126392233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			530 bp distal
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1445 bp upstream
Rr397994	regulatory region 397994			702 bp upstream
Rr584646	regulatory region 584646			1160 bp distal
Rr584647	regulatory region 584647			1677 bp distal
Rr584648	regulatory region 584648			1565 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			778 bp proximal
Tssr31569	transcription start site region 31569			1730 bp downstream
Tssr31570	transcription start site region 31570			1598 bp downstream
Tssr31571	transcription start site region 31571			1546 bp downstream
Tssr31572	transcription start site region 31572			1471 bp downstream
Tssr31573	transcription start site region 31573			1330 bp downstream
Tssr31574	transcription start site region 31574			1171 bp downstream
Tssr31575	transcription start site region 31575			1149 bp downstream