rs30509869 SNP Detail

Summary

• ID
  rs30509869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGTCTG GTTCGGCATC
  CAAGTAGTTG TTCCGTTCAG GAAAAGGGCC ACCCAACAGA ACCCACGTCC CTGCCATGTA
  TCCGCTATCC TTCTTTGCAC TAAGATGAGT CGCTCACCAT CATTCTAGGA TTTAGGTGTA
  CATCGTCTCT GAGAGGATTT ATTTATCCAG GCAGAGGAAA GCCCTAGAGC CCGAGAGAGC
  R
  TTTCCCCAGG GTAGCCTAGC TTGTGTAAAA CGACCTCCTC CACTGAAGTG GCAGGACTTC
  CTTGAGATGT TAAGGAGGGA CAGGGTACCT ACTGAAGATC TGCACAGGGG CAACTAGAGA
  CTCAGTCAGG AGGGAGTGTT GGTTTACCGA GCATCAAACC CCAAACCTAT CGCTAATTTC
  CACTATCAGG GAAGGGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955399	NES10678787	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G	G	G	G		A	G	G	A		A
ss135836850	ENSMUSSNP2397721	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
ss320946586	CHEV_3_126301095	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30509869					SNP	A	A	G	A	G	G	G	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955399	NES10678787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391826 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			123 bp distal
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1852 bp upstream
Rr367547	regulatory region 367547			1713 bp downstream
Rr397994	regulatory region 397994			1109 bp upstream
Rr584646	regulatory region 584646			753 bp distal
Rr584647	regulatory region 584647			1270 bp distal
Rr584648	regulatory region 584648			1158 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1185 bp proximal
Tssr31566	transcription start site region 31566			1834 bp downstream
Tssr31567	transcription start site region 31567			1805 bp downstream
Tssr31568	transcription start site region 31568			1758 bp downstream
Tssr31569	transcription start site region 31569			1323 bp downstream
Tssr31570	transcription start site region 31570			1191 bp downstream
Tssr31571	transcription start site region 31571			1139 bp downstream
Tssr31572	transcription start site region 31572			1064 bp downstream
Tssr31573	transcription start site region 31573			923 bp downstream
Tssr31574	transcription start site region 31574			764 bp downstream
Tssr31575	transcription start site region 31575			742 bp downstream