rs30509063 SNP Detail

Summary

• ID
  rs30509063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151771663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGATGCT GTCTGCGGAG
  ATCTGTGGGG CTCTGGCCCC TCCAGAGCAG CCAAAGAGTT GTATTTTCCA AAGGGGAAGA
  GGAGTCAGTC TTACACTGCA GGACACTGTG CTGGTAGGTG AGGGTTGGAA GTGGGGAGAT
  ATCAGATGTA GGCCAGCTGT CTGCTGGGTC TTTTCAGCAG CTGCTACTCC AGAGGAGCCC
  R
  CTGAGAAGTT GAAAAGGCTC CAGGGGAGAG TATCTCTTGC CCAAAGTGTT ACAGCTCTAT
  ACAGCAGACA CTCAGACAGT CCTTGACAAA ATAACGAGTA CTTTATTCCT GTCGACAGGG
  TCTTATATAC ACTTTGGGGT GGATTGGGGT CTAAGAGCAG ATGCTTTCTG TTGGCTTACC
  CCGAGATGTT AAGGATGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45436772	mCV24211759	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		G
ss51060942	NES13431225	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A		G	G	G		A	G	G	G		G
ss136100472	ENSMUSSNP2595239	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss321027903	CHEV_3_151728990	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30509063					SNP	A	A	A	G	A	G	G	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060942	NES13431225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151771663 () rs orientation: forward

Symbol	Name	Function Class
Gm64437	predicted gene, 64437	within coordinates
Rr587440	regulatory region 587440	712 bp proximal
Rr587441	regulatory region 587441	819 bp proximal