rs30509053 SNP Detail

Summary

• ID
  rs30509053
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCTTCT CGGGTCCTCC
  ACCTCTCCAC GGGGGACTTA GTGAATTTAT GATCTCTGCA GTTGTAGCTG TCATCCTGAG
  AAGTGTGCGC GCACGCGAGT GCGAATGTGT GTGTATGTGT GTTCGGAGAG GAAAGGAGAT
  GCATGTAAAA TGCAACATTT ATCACATTTT TGGTAAATAG ATGTCTCTTG CTCAGCCCGC
  K
  CTGTATCTGC GATCTGACCC AGGTTCGGAT GAGCTAACGA GAGAACACTC GCTCTCTGAG
  ATGGTGCCAT ATTTATCGAT GCCGAAAGTT CAACTTGGCT TGGTGGAGAG TCTGGTTCGG
  CATCCAAGTA GTTGTTCCGT TCAGGAAAAG GGCCACCCAA CAGAACCCAC GTCCCTGCCA
  TGTATCCGCT ATCCTTCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955393	NES10678784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30509053					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955393	NES10678784	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1408 bp downstream
Rr397994	regulatory region 397994			1414 bp upstream
Rr584646	regulatory region 584646			448 bp distal
Rr584647	regulatory region 584647			965 bp distal
Rr584648	regulatory region 584648			853 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1490 bp proximal
Tssr31566	transcription start site region 31566			1529 bp downstream
Tssr31567	transcription start site region 31567			1500 bp downstream
Tssr31568	transcription start site region 31568			1453 bp downstream
Tssr31569	transcription start site region 31569			1018 bp downstream
Tssr31570	transcription start site region 31570			886 bp downstream
Tssr31571	transcription start site region 31571			834 bp downstream
Tssr31572	transcription start site region 31572			759 bp downstream
Tssr31573	transcription start site region 31573			618 bp downstream
Tssr31574	transcription start site region 31574			459 bp downstream
Tssr31575	transcription start site region 31575			437 bp downstream