rs30509049 SNP Detail

Summary

• ID
  rs30509049
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACGCGG CTGGAGTCGC
  TAGAGGGAGG TGTGGGGCCG CCGAGGAGGG GGCTTCGCTG GGCGGGGAGA GGAGGGAGGA
  GGCGCCGGGG AGGAGCCGCG GCTGCCAGCT TCGCCCGAGC CGAGCGAGCG CACTCTGTCG
  CCCCGCGGGT TCCCAGCCTT GCGGCCCCGT GGAGAGGAGG GAGCGCGGGC CACCAGCGCC
  K
  CCTCTGCCCG CTGGAACGAC CGGCTGGGTG TTCACTCGGC CGCTGCCGCC CGCCACTCCG
  GGCGCTGCGT TGAGCTCTCC GTGCGGCCTC GGTGACCGCG GCAACCCCTC CTGACACCTC
  TCCCCCGCCC CTTCGGGAGC CCTCGGCCCG GCCACCGCGG CGGGAGGAGG AGAGGACAAG
  GGATCGCGGA GCGGGCTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955389	NES10678781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30509049					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955389	NES10678781	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			610 bp downstream
Rr584646	regulatory region 584646			within coordinates
Rr584647	regulatory region 584647			167 bp distal
Rr584648	regulatory region 584648			55 bp distal
Rr584649	regulatory region 584649			351 bp proximal
Tssr31566	transcription start site region 31566			731 bp downstream
Tssr31567	transcription start site region 31567			702 bp downstream
Tssr31568	transcription start site region 31568			655 bp downstream
Tssr31569	transcription start site region 31569			220 bp downstream
Tssr31570	transcription start site region 31570			88 bp downstream
Tssr31571	transcription start site region 31571			36 bp downstream
Tssr31572	transcription start site region 31572			28 bp upstream
Tssr31573	transcription start site region 31573			164 bp upstream
Tssr31574	transcription start site region 31574			225 bp upstream
Tssr31575	transcription start site region 31575			341 bp upstream