rs30508804 SNP Detail

Summary

• ID
  rs30508804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137658753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT CCAATCATCG ACGCCTTCCC
  Y
  GTTGCCATGA CTACTGGGCT GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45437250	mCV24271170	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135945569	ENSMUSSNP2325926	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320977258	CHEV_3_137615956	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30508804					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137658753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13869	CpG island 13869			1554 bp proximal
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr398063	regulatory region 398063			331 bp downstream
Rr586029	regulatory region 586029			within coordinates
Rr586030	regulatory region 586030			1319 bp distal
Rr586031	regulatory region 586031			1200 bp proximal
Rr586032	regulatory region 586032			1524 bp proximal
Tssr35861	transcription start site region 35861			1736 bp downstream
Tssr35862	transcription start site region 35862			1747 bp downstream
Tssr35863	transcription start site region 35863			1782 bp downstream