rs30508534 SNP Detail

Summary

• ID
  rs30508534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119543192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCACCCA GGACCATGAG CACCAGGGTC AGAGCCCAGC
  TGTCTCCCTC CCAGCTGCTT ATCAGGACAG ACAGGCTCCA CCTGTGGCTC ACCACCACAG
  Y
  AGCATTACTA GGAGCTCCAT GGGCTGGGGC TGGGGATGGG GGGCGGACAA CATCTCCCAC
  CTGACGTCAG GAAGCCGGAG TGAAAGCTGA GCCAACTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45936585	mCV22718283	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		T		C
ss48076575	NES11868225	PERLEGEN	MM_PANEL2	f	SNP	C			T		C	C	T	T			C	C
ss133591070	ENSMUSSNP3144046	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C				C
ss321928732	CHEV_6_119516249	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30508534					SNP	C	C	C	T	T	C	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076575	NES11868225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119543192 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	within coordinates
Rr637715	regulatory region 637715	306 bp distal