rs30508413 SNP Detail

Summary

• ID
  rs30508413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGCCCC TAGCTAAGGG
  ACAGCCGGGC GCAGCAGAGG TGGCCAAGGC TGGCAGCCCC AGGCAGTAGC TGCGAGCCGG
  GGGACGTTGG ACCCGGGTCT GGGAGCAGTA AACGCGAACC GCGCCCAGAT GCAAGGGTTG
  CTTCCCTCTC TCGGCTTCCC CGGCCTCGCG GCCATCCCGC CCGGGTAGAG GCATCCGGGT
  Y
  GTGGGAGCTT CGAGTGGTCT CTCATCTTTC CGCCCTTCGT GGGTCACTGC GACATCTCAG
  TCCCGTCCCC TTAAGCGCGC TCCCTGCTGC TCCGCGCATC TCCCTTCGGT CTCCCTAGAC
  GGCTGCGGGA GAGCAGCCCG AAGGGACGCG GCTGGAGTCG CTAGAGGGAG GTGTGGGGCC
  GCCGAGGAGG GGGCTTCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46955383	NES10678776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T		T	T
ss320946579	CHEV_3_126299650	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30508413					SNP	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955383	NES10678776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			268 bp downstream
Rr584646	regulatory region 584646			within coordinates
Rr584647	regulatory region 584647			154 bp proximal
Rr584648	regulatory region 584648			266 bp proximal
Rr584649	regulatory region 584649			693 bp proximal
Tssr31566	transcription start site region 31566			389 bp downstream
Tssr31567	transcription start site region 31567			360 bp downstream
Tssr31568	transcription start site region 31568			313 bp downstream
Tssr31569	transcription start site region 31569			81 bp upstream
Tssr31570	transcription start site region 31570			229 bp upstream
Tssr31571	transcription start site region 31571			261 bp upstream
Tssr31572	transcription start site region 31572			370 bp upstream
Tssr31573	transcription start site region 31573			506 bp upstream
Tssr31574	transcription start site region 31574			567 bp upstream
Tssr31575	transcription start site region 31575			683 bp upstream