rs30508411 SNP Detail

Summary

• ID
  rs30508411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126389710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAATTT TTTAAAAGTT
  CATGATGCGT CTCTATTTTC CGTAGGCCTC TAAATCTGCA ATTGCCTCGT TTATTAAAGA
  CTCAGAAGTG AAAAGAAGGC TCAGAAATGA TCTTAGCCAC CACTTACACC TTAACCCATC
  TTACATGCTA ATTTTTTTTC TCCATGCTAA TTTTTAAGCA ACAGTGTCAG ATATGCTTAA
  Y
  TGTACACACG TTCTTGAACT CTTAAATGGT TTTCCAGATA GCCACTGAGG GAGTACACTC
  CTGTGCCCCT ACTTGGCCTG CTCTTTGAGA ATGCAGGTAA AGAACTCCCA CCCTCCCTCT
  CCCTTCTCCC TCGGCAACGC GAAACAGGCT AGGCACGCTC ACGTGACGCT AATGACGTCA
  GCCCCCTCTG GGTCGCGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss45511632	mCV24012053	ABI	CRAMUS_MOUSE	f	SNP	T			C		C
ss46955381	NES10678774	PERLEGEN	MM_PANEL2	f	SNP		C	C		T	C	C	C		C
ss135836832	ENSMUSSNP701333	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					C
ss320946574	CHEV_3_126298979	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs30508411					SNP	T	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955381	NES10678774	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126389710 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	mRNA-UTR
Cpgi13785	CpG island 13785	within coordinates
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	87 bp upstream
Rr584646	regulatory region 584646	400 bp proximal
Rr584647	regulatory region 584647	825 bp proximal
Rr584648	regulatory region 584648	937 bp proximal
Rr584649	regulatory region 584649	1364 bp proximal
Tssr31566	transcription start site region 31566	265 bp upstream
Tssr31567	transcription start site region 31567	291 bp upstream
Tssr31568	transcription start site region 31568	347 bp upstream
Tssr31569	transcription start site region 31569	752 bp upstream
Tssr31570	transcription start site region 31570	900 bp upstream
Tssr31571	transcription start site region 31571	932 bp upstream
Tssr31572	transcription start site region 31572	1041 bp upstream
Tssr31573	transcription start site region 31573	1177 bp upstream
Tssr31574	transcription start site region 31574	1238 bp upstream
Tssr31575	transcription start site region 31575	1354 bp upstream