rs30508409 SNP Detail

Summary

• ID
  rs30508409
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126389597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCCCAC TGTGAAATTT
  TAAGTGCACG ATGTGATTCT AAGCACGAGC ACATAAGCAA TAGAAATGCA GGATTTTATG
  GTTTCCTGCT GTAGAACAAA AAGCAACAGT CTGAAGAAAA TTTTTTAAAA GTTCATGATG
  CGTCTCTATT TTCCGTAGGC CTCTAAATCT GCAATTGCCT CGTTTATTAA AGACTCAGAA
  S
  TGAAAAGAAG GCTCAGAAAT GATCTTAGCC ACCACTTACA CCTTAACCCA TCTTACATGC
  TAATTTTTTT TCTCCATGCT AATTTTTAAG CAACAGTGTC AGATATGCTT AACTGTACAC
  ACGTTCTTGA ACTCTTAAAT GGTTTTCCAG ATAGCCACTG AGGGAGTACA CTCCTGTGCC
  CCTACTTGGC CTGCTCTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss45448183	mCV24012054	ABI	CRAMUS_MOUSE	f	SNP	C			G		G
ss46955379	NES10678773	PERLEGEN	MM_PANEL2	f	SNP		G	G		C	G	G	G		G
ss135836829	ENSMUSSNP6563619	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					G
ss320946573	CHEV_3_126298866	CHEVERUD	SCREENING_POP	f	SNP									G		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs30508409					SNP	C	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955379	NES10678773	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126389597 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	mRNA-UTR
Cpgi13785	CpG island 13785	104 bp proximal
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	200 bp upstream
Rr584646	regulatory region 584646	513 bp proximal
Rr584647	regulatory region 584647	938 bp proximal
Rr584648	regulatory region 584648	1050 bp proximal
Rr584649	regulatory region 584649	1477 bp proximal
Tssr31566	transcription start site region 31566	378 bp upstream
Tssr31567	transcription start site region 31567	404 bp upstream
Tssr31568	transcription start site region 31568	460 bp upstream
Tssr31569	transcription start site region 31569	865 bp upstream
Tssr31570	transcription start site region 31570	1013 bp upstream
Tssr31571	transcription start site region 31571	1045 bp upstream
Tssr31572	transcription start site region 31572	1154 bp upstream
Tssr31573	transcription start site region 31573	1290 bp upstream
Tssr31574	transcription start site region 31574	1351 bp upstream
Tssr31575	transcription start site region 31575	1467 bp upstream