rs30508400 SNP Detail

Summary

• ID
  rs30508400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98992103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCACCTTC CCAAATGCTT GGGTTCATAA GGCAAACAAA
  CCAACAAACA AACCCATAAT TAAATGTTGA AACCCATTAA GTGTGCATCC TATTTCAACG
  Y
  TGTCCCTCCC CAGCCCAGCT GTATGCCGGT CCTCAGTTCT ATCAAAGGAA GACAGAAGAC
  TGCTCAGGGT GCTGTCCCCA CAGCAGAGGT GCACTGCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45934375	mCV23116910	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss133426097	ENSMUSSNP6174569	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30508400					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98992103 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr406577	regulatory region 406577			541 bp distal
Rr635319	regulatory region 635319			541 bp distal