rs30506946 SNP Detail

Summary

• ID
  rs30506946
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82936908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTTCTCA GTGACACAAA ATAGAGGTCA GCTCAACATT
  GCACTGAGTC GATCATGTCT TCCCCATGGG ACTCACGAGG GCTCAGGCAC ACTGTGGTCG
  M
  TCTGGGGATG CAGAGCAAGT CTATTGAAGT CCCAGCTCTT GAGCTCTTGT TTGCCTTATT
  CTGTATTCCC CCCCGTCCCC CGCTCTCCCC CCACCCAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45437823	mCV23187605	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				A		C
ss50990098	NES13925787	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C	A		A	C	C		A
ss135410283	ENSMUSSNP1614065	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320820860	CHEV_3_82833523	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30506946					SNP	C	C	C	C	C	C	A	C	C	A	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990098	NES13925787	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82936908 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr29661	transcription start site region 29661	1053 bp downstream
Tssr29662	transcription start site region 29662	1004 bp downstream
Tssr29663	transcription start site region 29663	987 bp downstream
Tssr29664	transcription start site region 29664	504 bp downstream
Tssr29665	transcription start site region 29665	465 bp downstream
Tssr29666	transcription start site region 29666	429 bp downstream
Tssr29667	transcription start site region 29667	386 bp downstream
Tssr29668	transcription start site region 29668	597 bp upstream
Tssr29669	transcription start site region 29669	641 bp upstream
Tssr29670	transcription start site region 29670	685 bp upstream
Tssr29671	transcription start site region 29671	1229 bp upstream
Tssr29672	transcription start site region 29672	1332 bp upstream
Tssr29673	transcription start site region 29673	1360 bp upstream
Tssr29674	transcription start site region 29674	1409 bp upstream
Tssr29675	transcription start site region 29675	1419 bp upstream
Tssr29676	transcription start site region 29676	1429 bp upstream
Tssr29677	transcription start site region 29677	1446 bp upstream
Tssr29678	transcription start site region 29678	1525 bp upstream
Tssr29679	transcription start site region 29679	1569 bp upstream
Tssr29680	transcription start site region 29680	1592 bp upstream
Tssr29681	transcription start site region 29681	1694 bp upstream
Tssr29682	transcription start site region 29682	1717 bp upstream
Tssr29683	transcription start site region 29683	1760 bp upstream
Tssr29684	transcription start site region 29684	1785 bp upstream
Tssr29685	transcription start site region 29685	1826 bp upstream
Tssr29686	transcription start site region 29686	1892 bp upstream
Tssr29687	transcription start site region 29687	1990 bp upstream
Tssr33800	transcription start site region 33800	1501 bp downstream
Tssr33801	transcription start site region 33801	1846 bp downstream
Tssr33802	transcription start site region 33802	1982 bp downstream