rs30506101 SNP Detail

Summary

• ID
  rs30506101
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27210970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCCCAG CACAGAGGCA
  GTAGAAACAA GAGAAGATCA AGACTGGACC GTGAAGCACC AGGAACTGAC TAAGGTGCAT
  AATTTACCCA CCAAAGCAGA GCTGGCCTCC AGGTTCCCCA GCGCCCCCCT CAGTCCCTAC
  CTGGCATACC CTGCCCCCAA CAGGGAACTT TCCAGCCCAG GTGCTTGTCC GCCCTCCCCC
  W
  AGAGTCTCCT CCCAATATAA TCCAGACATT TAGTCTCTGC CCTTCTCTCT CTTCCTCTCC
  TTCTCTTCTT TCTCCTCCAA TGCTCCCTTT TGCTCCCCTA CCCCCACCCC CATGGCAATC
  CCATGGCCTC AATCCCTGGG GTCAGTGAAC CTGCCCGCCT GAGAGTAGCA TCCCAATAAA
  CCTGTCTTCA GGTACTCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45437523	mCV24689753	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss134702364	ENSMUSSNP2372787	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30506101					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27210970 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Rr374716	regulatory region 374716	551 bp downstream
Rr574354	regulatory region 574354	62 bp distal