rs30506057 SNP Detail

Summary

• ID
  rs30506057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54537100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGCACA TGGTGGTAGT
  GCTAGACGTA CACAGTTTGC ATGTTACACC AGCCATCACC AAGACACGTG ACAGATTACT
  TCATCATGTT GTAACCTTAC AGTAAAGACA CAGGCAAAAG GAACGTTTTA GAGGTTTGTC
  ATTTTCCACC CACTTTGGAC AGAGTCTCAC TCGTAAACTC GTCTGACTTT GAATTTGGAG
  K
  AGAATTGCAC ACCTCATGAG CCACCACACC TGACTTGTAT TGCAATCTTA TGGGTCTTTC
  ATTAATATTT AGTCTGTCAT CTCCCAAACA TCACTACCTG ATCATGACTA TGTTTAATAA
  AAAGTTGGCA ATGAACATGT TTTCTTTCCT TTTCTTTCTT TCTCTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954918	NES10815799	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	T		T	T		T
ss320772253	CHEV_3_54433601	CHEVERUD	SCREENING_POP	f	SNP									T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30506057					SNP	G	G	T	G	T	G	G	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954918	NES10815799	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54537100 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	669 bp proximal