rs30504653 SNP Detail

Summary

• ID
  rs30504653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138147368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATTGCTAC TTCATAACTA TCATCTGGTT GTTATGAATC
  GTAATGAAAA TATCTCATGT TCAGGATACC TGATACGTGA TCCCTATGAA AGGATCATTC
  R
  ACCCCCAGAA GGGTCATGAC CCACACGTGA CAAACACTGC TCTAAAGGAA ACAGTAGGAA
  AATTTTTCTC CCTCCTTCCC TGAAAAATCG TGAAAATAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45436818	mCV23935707	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135953384	ENSMUSSNP2002937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30504653					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138147368 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	936 bp proximal
Gm64924	predicted gene, 64924	721 bp downstream
Rr398071	regulatory region 398071	1327 bp upstream
Rr586135	regulatory region 586135	959 bp proximal
Rr586136	regulatory region 586136	996 bp proximal
Rr586137	regulatory region 586137	1497 bp proximal
Rr586138	regulatory region 586138	1946 bp proximal
Tssr31984	transcription start site region 31984	1478 bp upstream