rs30504505 SNP Detail

Summary

• ID
  rs30504505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CCTGAAACGT CAGGTCTGGA
  Y
  GGTGGGCACA GAGAGCAGCA ACGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45437597	mCV22287103	ABI	CRAMUS_MOUSE	f	SNP		C	T			C	C
ss46813256	NES10715102	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		C	C		C	T	C	C		T
ss135546286	ENSMUSSNP6887390	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
ss320851737	CHEV_3_101101759	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30504505					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813256	NES10715102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205152 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1228 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr397890	regulatory region 397890	1934 bp downstream
Rr581999	regulatory region 581999	1854 bp distal
Rr582001	regulatory region 582001	1059 bp distal
Rr582002	regulatory region 582002	340 bp distal
Tssr30898	transcription start site region 30898	330 bp downstream
Tssr30899	transcription start site region 30899	300 bp downstream
Tssr34786	transcription start site region 34786	1270 bp upstream