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rs30504395 SNP Detail
Summary
  • ID
    rs30504395
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:54579876 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGCTCTTGA CCATGCCTGG
    CTTGAGACCC AGTGTAGTTA AGTTTGTGGT TTCTCAATAA ACCAAAGTAA AATTCCCCAG
    TCAGAACTGG CCACACTTTG AATTTAGGCC CGGTTAGCCA CTTGAGAGCC TTCTTGGAGG
    TGTGGTTTTT CTTAAGTGTC ACAAGATGGA TTCATAGAGT AATTGGGCAG CTTCCACTCG
    M
    TGGCCACTTA TGCTCAACCC CATTCATTTG TGACGGCCCT GGAGATGGAC CCCTCTGTTT
    ATATTAAGTC ACCATTTTAG AACTTAGGGA CATTTGCCTG AAGGGGGGGG GGCTGCAAGG
    TGAAATAGGT GTGCTGTTCA TGTTTCTATC CACATCCTTA TAATCATTCT GACCGTTGAG
    TAAAGTATCA TGATTGACAG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46955198 NES10813125 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C A C C A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30504395 SNP C C C C C C C C C C A C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46955198 NES10813125 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:54579876 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65558 predicted gene, 65558 789 bp downstream
Rr576826 regulatory region 576826 242 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory