rs30504152 SNP Detail

Summary

• ID
  rs30504152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143657825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTATTTA CAGGCCTAGA
  ATCACATAAA CTATCCAAAT CTCAACTCTT CCTTCTTGCC ACATAACCCT ACTAGGAAGG
  TATGGACCCT CACTCACACA CACACACACA CACACACACA CACACACACA CACACACACA
  CACTACTTTC CAGATGACAT TAGAAAGCAT TCTAACTCAA CCATTCCTAC CACTTCACAT
  Y
  TGCAAGTAAA GTTCGCCATT AACAAACTCT ATCCCAGTTC ACCAAACACT AAAAACCAAC
  TTTGGAGCTA TTCCAAGTCT TGAGTCCCTT CATATTTTAA GTTTATGCAT TTTGAAAGAA
  CCCAGACCAC AAAGCCAGCT AGAAAATTTT AAATTATGGG CGTGGCCCAG TGTTATTTTT
  AAGCCATTAA ATGGATCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45436349	mCV23568671	ABI	CRAMUS_MOUSE	f	SNP	C						T
ss51658658	NES14647076	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	C	T	T	T	C	C	T	C	T
ss136027408	ENSMUSSNP527720	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30504152					SNP	C	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658658	NES14647076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143657825 () rs orientation: forward

Symbol	Name	Function Class
Rr586569	regulatory region 586569	1985 bp distal