rs30503517 SNP Detail

Summary

• ID
  rs30503517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54579336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGTATT AAGTAATAAT
  TTATGCTTCT AAAACTTTCA TCTCTTTTCT AAAGGATAAC TAGTATTGTT TTTCAAAGCA
  CAGTTTTTAA AATGCTCTTG CAGTGTGAGT GTATGATGGC TGGATGCGAT ATAAAGTCCC
  TTTGAAGACA GGCAGAAAAC AAGTAAGTTG ACACCCAAAA TCACAAGACT CTGCAGAACC
  Y
  AGAGCCACCT AAATATCCCA GATCTCAAGA GCCCGAGGAA AGGAGATTGC CAAGGCCAGC
  CTGGGCTACA TAATGCATTC CAGGCTAGCC TGGGCTACAG TGTGACACCA TGTCTCCATT
  TATGTACAAA AATATTGGCA GGTTGGGTGT TTACCTACAG ACAGAAGTGC TCTGAGGAGC
  AAAACCCAAC TTCTACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955190	NES10813172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30503517					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955190	NES10813172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54579336 () rs orientation: forward

Symbol	Name	Function Class
Gm65558	predicted gene, 65558	1329 bp downstream
Rr576826	regulatory region 576826	782 bp proximal