rs30503269 SNP Detail

Summary

• ID
  rs30503269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153347999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAATTAT TAGCATTTCC
  AGATGCAAAC TACCTGTGTG TGTTCTTCAC GGTACTGAAC ACTAACCATA TTTTTATGGC
  TAATGTGAAA ATTAGTTAGC TAATGTGGAT GTTACCTTCC TAACGTGGCG AGAGCCGTGG
  AAGCATATAA AATATTGCAT ATCGATTAAA TATAAGACAA GGGATGTCTT AATAATCCCC
  R
  TGTGATTAAA AGACAAGAAC AGACTCCATT CTCTGGCTCT ATTACATTTC AGTGATGTAA
  CAGGAATGAG ACAGTTTACA TCTGGAAGCC CTTACCATAT CAATGATCAA TCAGAAATCC
  TGACTCCACA AACAGGTAGG CAGCCCACAC TCTTCTACCA GTGAAACGGA AACAACCAAA
  GCTTTCTTTC CCAAACAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45435842	mCV23621173	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss136110314	ENSMUSSNP6832020	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30503269					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153347999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			1466 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant