rs30503224 SNP Detail

Summary

• ID
  rs30503224
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55440882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG ACATAAGCAA GTCATGAGGG
  K
  CAGGTTAACC TGGCCAGCCG GCATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45436436	mCV22823742	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss135188594	ENSMUSSNP2180068	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss320775342	CHEV_3_55337383	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30503224					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55440882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576959	regulatory region 576959			1820 bp distal
Rr576960	regulatory region 576960			1581 bp distal
Rr576961	regulatory region 576961			667 bp distal
Tssr29169	transcription start site region 29169			317 bp upstream
Tssr29170	transcription start site region 29170			531 bp upstream