rs30502968 SNP Detail

Summary

• ID
  rs30502968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54554307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCAGTCT TCCCCGATGC
  CTCAGAGCAG TCTTCTGCGG GGCCCGACAT GCTCTCCCCC AGCCAGAGGC AGGATTTCAA
  AGTGAGCAAA TTTCCTGACA AAAAGTATTG GATAGAGACA CAGTTCCATG AAGATGGGTT
  TCATCCACTT CTCTGATTGC CCCAGGCTGG ACATTAACTA GGAACACATT TGCTAACTCA
  Y
  TCACTATCCT AGACTTTGAA CACAGACATT TGAAACGGAA CTCTAAAGGT TTATTCATAG
  TGCCCTGAGA CCTGAGCCCA CCCCCATGAC CCAACACACA CATACACACA AACTCACACA
  TAAACACATG TACACATATC TCATTGCACC CCAACATATA TCACATATAT GCACATACAC
  ATCATACAAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46954980	NES10814687	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	C	C	C	T		C	T	T	C		T
ss135184655	ENSMUSSNP5696965	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320772290	CHEV_3_54450808	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30502968					SNP	C	C	T	T	C	T	C	C	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954980	NES10814687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54554307 () rs orientation: forward

Symbol	Name	Function Class
Rr576822	regulatory region 576822	741 bp proximal