rs30502583 SNP Detail

Summary

• ID
  rs30502583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54579147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAATAA TTAAGAATTC
  TGAAAGCTGG AAATGAGCCA GGTATGATAG CTCCAATCTG TCATCAGAGC GATCTGGTGA
  TTGAGGTAGA GTTCAAAGTC AGCTTGGTTT ACTTAGCCAG GTCCATGCCA GCCAGGGCTA
  CATAGCAAGA CTCTGTCAAA AAGCAAAAAC AAAACAAAAC AAAAAGAAAC CCTGGTATTA
  R
  GTAATAATTT ATGCTTCTAA AACTTTCATC TCTTTTCTAA AGGATAACTA GTATTGTTTT
  TCAAAGCACA GTTTTTAAAA TGCTCTTGCA GTGTGAGTGT ATGATGGCTG GATGCGATAT
  AAAGTCCCTT TGAAGACAGG CAGAAAACAA GTAAGTTGAC ACCCAAAATC ACAAGACTCT
  GCAGAACCCA GAGCCACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955186	NES10813170	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30502583					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955186	NES10813170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54579147 () rs orientation: forward

Symbol	Name	Function Class
Gm65558	predicted gene, 65558	1518 bp downstream
Rr576825	regulatory region 576825	1960 bp distal
Rr576826	regulatory region 576826	971 bp proximal