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rs30502583 SNP Detail
Summary
  • ID
    rs30502583
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:54579147 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAAAAATAA TTAAGAATTC
    TGAAAGCTGG AAATGAGCCA GGTATGATAG CTCCAATCTG TCATCAGAGC GATCTGGTGA
    TTGAGGTAGA GTTCAAAGTC AGCTTGGTTT ACTTAGCCAG GTCCATGCCA GCCAGGGCTA
    CATAGCAAGA CTCTGTCAAA AAGCAAAAAC AAAACAAAAC AAAAAGAAAC CCTGGTATTA
    R
    GTAATAATTT ATGCTTCTAA AACTTTCATC TCTTTTCTAA AGGATAACTA GTATTGTTTT
    TCAAAGCACA GTTTTTAAAA TGCTCTTGCA GTGTGAGTGT ATGATGGCTG GATGCGATAT
    AAAGTCCCTT TGAAGACAGG CAGAAAACAA GTAAGTTGAC ACCCAAAATC ACAAGACTCT
    GCAGAACCCA GAGCCACCTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46955186 NES10813170 PERLEGEN MM_PANEL2 f SNP A A A A A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30502583 SNP A A A A A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46955186 NES10813170 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:54579147 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65558 predicted gene, 65558 1518 bp downstream
Rr576825 regulatory region 576825 1960 bp distal
Rr576826 regulatory region 576826 971 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory