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rs30502582 SNP Detail
Summary
  • ID
    rs30502582
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:54578942 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCACTTTCCT GAAGAGAAAC
    AGGAGACCGT GGCTTGGGGT GGAGGGGGTG GGTGGGAGGT TGGTTGGAGT ACTGGAAGGA
    GAGGAAGTGG GGGTGAGGGG GAATTTCAGT CAGAATGTAG TAAATGAGAG AATTTTTTTT
    TTAATTTAAA AGAGCTAGGC TTTTTTTTTA AAGGAGTTAG GTTCTTTAAT GTTTATTCAG
    Y
    TTCTTAAAAA ATAATTAAGA ATTCTGAAAG CTGGAAATGA GCCAGGTATG ATAGCTCCAA
    TCTGTCATCA GAGCGATCTG GTGATTGAGG TAGAGTTCAA AGTCAGCTTG GTTTACTTAG
    CCAGGTCCAT GCCAGCCAGG GCTACATAGC AAGACTCTGT CAAAAAGCAA AAACAAAACA
    AAACAAAAAG AAACCCTGGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss46955184 NES10813203 PERLEGEN MM_PANEL2 f SNP T T C T C T T C C C C C
ss320772349 CHEV_3_54475443 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs30502582 SNP T T C T C T T C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46955184 NES10813203 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:54578942 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65558 predicted gene, 65558 1723 bp downstream
Rr576825 regulatory region 576825 1755 bp distal
Rr576826 regulatory region 576826 1176 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory