rs30502582 SNP Detail

Summary

• ID
  rs30502582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54578942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTTCCT GAAGAGAAAC
  AGGAGACCGT GGCTTGGGGT GGAGGGGGTG GGTGGGAGGT TGGTTGGAGT ACTGGAAGGA
  GAGGAAGTGG GGGTGAGGGG GAATTTCAGT CAGAATGTAG TAAATGAGAG AATTTTTTTT
  TTAATTTAAA AGAGCTAGGC TTTTTTTTTA AAGGAGTTAG GTTCTTTAAT GTTTATTCAG
  Y
  TTCTTAAAAA ATAATTAAGA ATTCTGAAAG CTGGAAATGA GCCAGGTATG ATAGCTCCAA
  TCTGTCATCA GAGCGATCTG GTGATTGAGG TAGAGTTCAA AGTCAGCTTG GTTTACTTAG
  CCAGGTCCAT GCCAGCCAGG GCTACATAGC AAGACTCTGT CAAAAAGCAA AAACAAAACA
  AAACAAAAAG AAACCCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46955184	NES10813203	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C		C	C	C		C
ss320772349	CHEV_3_54475443	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30502582					SNP	T	T	C	T	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955184	NES10813203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54578942 () rs orientation: forward

Symbol	Name	Function Class
Gm65558	predicted gene, 65558	1723 bp downstream
Rr576825	regulatory region 576825	1755 bp distal
Rr576826	regulatory region 576826	1176 bp proximal