rs30502581 SNP Detail

Summary

• ID
  rs30502581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54578356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTCCC TAACTTGTAA
  CTCCACTTCT AGAGGATCCA ACACCCTTTT TGGCCTCTGT GGACACTGAG CACATACACA
  GTGCATGTAT ATACATGTAA GTACTCACAT GTACACGCAA AATAAAAATG AGTAAGTCTT
  TTCCAAAATA CATACAGATA CATGTATGGA TTCACATCTA TTTAACATAT AATATTCATT
  R
  ATACACAATA AAATATTGGT GCTTTTCTAT GTAGGATTTA CTTAGAGGAG AGTTAAGTTC
  CTTAGGATTG TAGAGGCCTG AGGCATCAAG GACACCGCAA GAAAACTCTC AGGGCCCATA
  GGAGCTGGCA GAGACTAAAC CAACAATCAG AGAGCCTCCA TGGGTCTGAC CTAGGACCTC
  TACGCTATGC TATGGTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955182	NES10813244	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30502581					SNP	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955182	NES10813244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54578356 () rs orientation: forward

Symbol	Name	Function Class
Rr374984	regulatory region 374984	1446 bp downstream
Rr576825	regulatory region 576825	1169 bp distal
Rr576826	regulatory region 576826	1762 bp proximal