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rs30502581 SNP Detail
Summary
  • ID
    rs30502581
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:54578356 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCAGGTCCC TAACTTGTAA
    CTCCACTTCT AGAGGATCCA ACACCCTTTT TGGCCTCTGT GGACACTGAG CACATACACA
    GTGCATGTAT ATACATGTAA GTACTCACAT GTACACGCAA AATAAAAATG AGTAAGTCTT
    TTCCAAAATA CATACAGATA CATGTATGGA TTCACATCTA TTTAACATAT AATATTCATT
    R
    ATACACAATA AAATATTGGT GCTTTTCTAT GTAGGATTTA CTTAGAGGAG AGTTAAGTTC
    CTTAGGATTG TAGAGGCCTG AGGCATCAAG GACACCGCAA GAAAACTCTC AGGGCCCATA
    GGAGCTGGCA GAGACTAAAC CAACAATCAG AGAGCCTCCA TGGGTCTGAC CTAGGACCTC
    TACGCTATGC TATGGTTGTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
C3H/HeJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46955182 NES10813244 PERLEGEN MM_PANEL2 f SNP A A A G A G A
SNP Consensus Information
SNP Consensus Type
AKR/J
C3H/HeJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30502581 SNP A A A G A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46955182 NES10813244 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:54578356 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr374984 regulatory region 374984 1446 bp downstream
Rr576825 regulatory region 576825 1169 bp distal
Rr576826 regulatory region 576826 1762 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory