rs30502480 SNP Detail

Summary

• ID
  rs30502480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTTCTGGGG ACACTATGGG TGAGTAGGCT TGGCAGGTTC TCTTGAACCC TCTCTTCTCA
  GAGCTTGAAC TTACAAAAGG ATTTCTGTTG TCATTTCTCT ATAGGAAACT TCTGAAATAA
  AGTCCAGATT AAGTTTTTCT GTTCTTTCAA GGGTGCAGTT TCTGTCTTAT AGGCTTCCCC
  ATGCCCATAG CTGGGGAAGG GCACATCTCC TATCAGAAAG TTATATGCCT TACTTCTCCT
  TTAACCTAGG TACCCCCATG CACCCATTGT CCAACAATAG TTACTAAAAT ATGTGAGATC
  W
  CTTATTTTTA ATTCTTCTTC TTCTTCTTCT TCTTTTTTTT TTTTTTTGGT TTTTCAAGAC
  AGGGTTTCTC TGGGTAGCCC TAGCTGTCCT GGAACTCACT CTGTAGAACA GGCTGGCCTC
  GAACTCAGAA ATCTGCCTGC CTCTGCCTCC CAAGTGCTGG GATTACTCAG AGGCACTCAA
  ATTATTTTAT CTTTTGCATA TTACTTTCTT GACAACAGGT AAGTATATTT TTATGCTGCA
  CTTTCAGATC CTCTTTCTTA AAGTAGTAAC ATTTGAAAGC TGTTTCTTTC CAAAGCCTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45435635	mCV25299777	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134667137	ENSMUSSNP1609515	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30502480					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402290 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	814 bp downstream
Rr397615	regulatory region 397615	1916 bp upstream
Rr573976	regulatory region 573976	119 bp proximal
Rr573977	regulatory region 573977	1763 bp proximal