rs30502276 SNP Detail

Summary

• ID
  rs30502276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTTGAG TCAGGGGAAC
  CAATAACCGC CCCCCACCCC CTTCTATCTT TGGGTCTGTT TTCTGTTAGT AGTAGAAAAA
  TCCTTAAGAA CCAGACTCTT GTCTTAGGAA TAATGATAAA TAACAACAAC AACAACAAAA
  AAAAGCTAGA GTTGCTGTAG TATAAATATG TTTTTCATCT TTTTTGAAAT GACAGCCCTG
  Y
  GACAGACTTG TAACTAATAA GTCCACCATG CAAATGAGTT TAAATGCTTC CCCGATGTGA
  CACAGCTGGC AGTCAGCTGC TCTCAGGGCT GCTACGTTCA AATCCCAGGC TGCTTCTCTG
  TGTGTTTTCT ACCTCAGACC ACTGAAGCAT GAAGTCTTTG GCGGTGTGTC AGGTGGTATG
  AACAGCCATG ACATGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46954622	NES10818511	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C		T	C	C	T		T
ss320772035	CHEV_3_54392234	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30502276					SNP	T	T	C	T	C	T	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954622	NES10818511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495733 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr367440	regulatory region 367440	1757 bp upstream
Rr576811	regulatory region 576811	380 bp distal
Rr576812	regulatory region 576812	within coordinates
Rr576813	regulatory region 576813	1664 bp proximal