rs30502275 SNP Detail

Summary

• ID
  rs30502275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGACGAA GCCACATGTA
  GGCAAAGACA TGTCTGAAAA GACAGACAGC AGGACCTGAG GACAATTCGT CCTCCTGATC
  AAACCGTTCC TGCAGCAGAC ACTCCTCAAT TTTGAGTCAG GGGAACCAAT AACCGCCCCC
  CACCCCCTTC TATCTTTGGG TCTGTTTTCT GTTAGTAGTA GAAAAATCCT TAAGAACCAG
  R
  CTCTTGTCTT AGGAATAATG ATAAATAACA ACAACAACAA CAAAAAAAAG CTAGAGTTGC
  TGTAGTATAA ATATGTTTTT CATCTTTTTT GAAATGACAG CCCTGTGACA GACTTGTAAC
  TAATAAGTCC ACCATGCAAA TGAGTTTAAA TGCTTCCCCG ATGTGACACA GCTGGCAGTC
  AGCTGCTCTC AGGGCTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954620	NES10818510	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G		A	G		A
ss320772034	CHEV_3_54392128	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30502275					SNP	A	A	G	A	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954620	NES10818510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495627 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr367440	regulatory region 367440	1863 bp upstream
Rr576811	regulatory region 576811	274 bp distal
Rr576812	regulatory region 576812	42 bp proximal
Rr576813	regulatory region 576813	1770 bp proximal