rs30501823 SNP Detail

Summary

• ID
  rs30501823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54553503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTTATT TTGTTTTGTG
  ATTTCAATTG GAATTAAATC CAAATATTAT TATGAAGACT CAGGTAATGT TGACATGACT
  TTTTTTTCTT GCTCGTTAAT GGGTCTTTAT TATTAATCCA GGAACACATC TTGTAGTTTT
  AATACTGTAA TCAAGCAATT ATGCAGCTGA ACAGAAGCCT GGTAGAATTA AAACCCTTAC
  R
  CTCAGGCGGA ACCATGCTTA TTGCCGTTCT ACCCACAATA GCTAGAGGAT GAAACTGACC
  TAGCTGTCCA TCAAAGGATG AATGGATAAT GAAAATGTGG CACCTTCACA CAATGGAATT
  ATCTCCAGCT GCAAAGAAAA TAGAACCAGA AGGTGAGTGG ATGAAACTGG AAAACAAAAT
  ACTGAGTGAA GTCAAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954974	NES10814767	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30501823					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954974	NES10814767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54553503 () rs orientation: forward

Symbol	Name	Function Class
Rr576822	regulatory region 576822	1545 bp proximal