rs30501341 SNP Detail

Summary

• ID
  rs30501341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCACCA GGCTCTGGAG
  AAGGCTTCTG TGACTCAGAT TTGAGTCAGT CATCCTAACC AGTTCGTTTT AGAAATGAGC
  ATGCCATCTA ACTAGGTCCA ATTAGGGTGA ATCCTGTGGT TTGCACAGAA ATGTCCAGAA
  AGAAATGAGT TCCTGTTAGT AGAGGTGCCT GTTGTCTACA GCGTCTGACC ATGCTACTGA
  Y
  GTCATGTGAA GGTAAGACGA AGCCACATGT AGGCAAAGAC ATGTCTGAAA AGACAGACAG
  CAGGACCTGA GGACAATTCG TCCTCCTGAT CAAACCGTTC CTGCAGCAGA CACTCCTCAA
  TTTTGAGTCA GGGGAACCAA TAACCGCCCC CCACCCCCTT CTATCTTTGG GTCTGTTTTC
  TGTTAGTAGT AGAAAAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46954616	NES10818508	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C		C	C	C	C		C
ss320772031	CHEV_3_54391916	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30501341					SNP	T	T	C	T	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954616	NES10818508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495415 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	62 bp distal
Rr576812	regulatory region 576812	254 bp proximal
Rr576813	regulatory region 576813	1982 bp proximal