rs30501339 SNP Detail

Summary

• ID
  rs30501339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGAACG CTTTCTCTCC
  CGAGTCCAGC ATTCTCGGAA GAAAATGGCG TCATCTCAGA AGCATCAAAC CTCTCAGTAT
  AATGCCTTCT CTATCCCAGT GCCTGCTGCC CTCCTCTTGG TTATAAGTCC CACGCTCCTA
  TGCCACCAGG CTCTGGAGAA GGCTTCTGTG ACTCAGATTT GAGTCAGTCA TCCTAACCAG
  Y
  TCGTTTTAGA AATGAGCATG CCATCTAACT AGGTCCAATT AGGGTGAATC CTGTGGTTTG
  CACAGAAATG TCCAGAAAGA AATGAGTTCC TGTTAGTAGA GGTGCCTGTT GTCTACAGCG
  TCTGACCATG CTACTGATGT CATGTGAAGG TAAGACGAAG CCACATGTAG GCAAAGACAT
  GTCTGAAAAG ACAGACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954614	NES10818507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30501339					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954614	NES10818507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495277 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	within coordinates
Rr576812	regulatory region 576812	392 bp proximal