rs30501180 SNP Detail

Summary

• ID
  rs30501180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTAGACT TCTTGGTCCC
  GTATAAGTAT ATCTGCTTAG TAGTTTCCTT CAAGACCAAA TGTCCAATCA AACTCTCTGT
  TGAAAGATAA AACTTGGGAC AAACAAGTTC CAGTAGAGCA CTGTGCACAC AGAGGGACTC
  CCTGCTGGAG CCCCGCCTCC CTGTCTCCTC CCTGCTGGAG CCCCGCCTCC CTGCCTCCTC
  M
  CTGCTGAAGC CCCGCCTCCC TGTCTCCTCC CTGCTGGAGC CCCGCCTCCC TGTCTCCTCC
  CTGCTGGAGC CCCGCCTCCC TGTCTCCTCC CTGCTGGAGC CCCGCCTCCC TGTCTCCTCC
  CTGCTGGAGC CCCGCCTCCC TGCCACCTCA CTGCTGAAGC TCCAACCTCC TTGTCTTCTT
  ACTGCTGTAC TCTCTTACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45436612	mCV22817319	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss135180532	ENSMUSSNP3551394	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30501180					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893071 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	within coordinates
Rr576615	regulatory region 576615	1339 bp distal
Rr576616	regulatory region 576616	within coordinates