rs30500632 SNP Detail

Summary

• ID
  rs30500632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54506310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGAGGG TGTGTCTCCC
  ATGCTAACCT CTGAGAAATT ATCCTCAGCG TGTGAATGGT GTCAAGAATC GTGAAGGATT
  TGAAATAGGT GAGATATAGG ATTATTGGGG CCATGCGGCT TCCAAGGTCT GTTCTGAATG
  ATTCATGAAA AATGCAGCTT CCCGTTTGCA TCTTGCGATC TCTGTTCTAA GCGTGCTTTC
  Y
  CTGATACTTT GAGATTCCTT GTTTTTTCTT TAAAGGCCCC CTCCTGCTAA ATGGCTGCTT
  GTCCACCCTG TGGCTGACCT CACACTGGGT TATCTCACAT GGCTACTAGG GCTGTCAGTT
  TTAAATTCAT TAACAATAAC TCAGAGTCAC CAATAATGTG TTGGTGTCAA TTAAGGAAAC
  ATATTTAAAA AAAAATGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss46954762	NES10817810	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs30500632					SNP	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954762	NES10817810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54506310 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	745 bp distal