rs30500628 SNP Detail

Summary

• ID
  rs30500628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54505597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAAGGGA TTAGTGGAGG
  ACTGGCCTCT GTGCTCAAAA GAGACTCAGT CTGGAGCCAG GCCCGTTGCT TGGGGAGCTA
  AACAATTCCA GTTAAGATAC TTTACCAAAA TTGTAATCAT GAGCTTGGGG TTGCTCGGAC
  TCACCCAGCT CCAAAATCCT TACTCCAAAT GGGCTTTTTA AGATGTCTAT AAATCTCCTG
  K
  CCCCTCAGTC ACTGGTGAAC TTATGGAGTC TACACCATGT ATCTATTGAT GAGTGGCTGA
  TTGCCACGCT ACTTGGCAAC TTCAAACAAG TAGCCTTGCT TCATCTCTGT CCTTTGGGTG
  TAAGGGCTAT GGGTACAGCT GCGGTTCACT GTATTACAGT TCCTCACAAG ATCACTCTCA
  AGGCTGGCTG ATCTTGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46954758	NES10817882	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T		T	T
ss320772141	CHEV_3_54402098	CHEVERUD	SCREENING_POP	f	SNP					T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30500628					SNP	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954758	NES10817882	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54505597 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	32 bp distal