rs30500624 SNP Detail

Summary

• ID
  rs30500624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54503669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGCTAT TTTTAAAAGT
  AAAGAATAAC AAAAAAAAAT TGTTTTCTAG GTGATAGAGA GTAATAATAC TCAAATTGTG
  AGTAATCTTA GCTTATGTAT TTTTTAACTT TTAGTAATAA GGTGAGCCTG GGGATGTTTT
  ACATAATTAT TCGATTTTTC AATGGAAAAA TTGTGCATAC AGAAGAAAAT ATGCCTTGGA
  Y
  AACCACGTAG AACAATTTTG TTAGTAAAAG TCTGCTCTGA CTCTGTCTCA TAGATATATA
  GATATAGACA TAGATATAGA TACAGACACA GACACAGACA CAGACACAGG CACAGGCACA
  GGCACAGACA GACACAGACA CAGACAGACA GAGACACAGG CACGGGCACA GACACAGACA
  CACACAGACA CAGGCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954754	NES10818002	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	C	C	T		T	T		C
ss320772128	CHEV_3_54400170	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30500624					SNP	C	C	T	T	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954754	NES10818002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54503669 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	1644 bp proximal