rs30500460 SNP Detail

Summary

• ID
  rs30500460
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146558247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGC TGAGGTGATC CCAAGACGAC
  M
  CGCGGAGTGG ACCGACCGGG GAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45435026	mCV23122955	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		C
ss61097596	NES16606924	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	A	A		C	C	C	C	A	A
ss136046463	ENSMUSSNP2126033	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30500460					SNP	A	A	A	C	A	A	A	A	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097596	NES16606924	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146558247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	within coordinates
Gm65628	predicted gene, 65628	within coordinates
Rr587096	regulatory region 587096	115 bp distal
Rr587097	regulatory region 587097	within coordinates
Rr587098	regulatory region 587098	164 bp proximal
Tssr32369	transcription start site region 32369	54 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	mRNA-UTR