rs30500440 SNP Detail

Summary

• ID
  rs30500440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54494897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAACGCT
  AACTATCTGC CTCAGAAGAG CTTTGCGAAT GTAACATTTG GTTTTAGCTG TGGAAAGTGC
  TTAAGTGCAG TGAAACCTTA AATCATCTGC AGCGTTTCAG GGCAAACGCT GGCCGGTGCC
  CTGTATAAAT CTTGCCCTAA AGCTAAGACG AAGAATGTGC TAAGCAGACC CAGTGAGCGG
  Y
  TCGGCTCGCC AGGCTCCTCC CTAGGAAAAT GTGGCTTTCC TATACATCAC TCGATTCAAA
  ACAGATGGGG AACAACCATC TGCCAGAAGG AAAGGAAAGA TGTAGCGCAT ATTATAATTA
  CGGGATTCAG ACAAACAAGG GGAAGGGGAA GATGACTTTA AAGCAAATAG GCAGTCCCTT
  CTATGAACGC TTTCTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954604	NES10818502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30500440					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954604	NES10818502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54494897 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	within coordinates
Rr576812	regulatory region 576812	772 bp proximal