rs30500103 SNP Detail

Summary

• ID
  rs30500103
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACACTG GCATGGTGGG
  TGGGCAGTCC TGTGCCCGTC TTCTGCCCCT ACCCCAAGAC TGTTCATTTT CTTAGTAATA
  CCTGCCAACA GGTAGTGTCC CTTGTACTGC CTGTCCTTCC TGTACTGAGA ACCACGCCCT
  TTCTCTCCAG TATCCTTTTG TGTCTACCGA GTTGTCGCAG GTGCCAGGCT CCATGCCTCA
  S
  CCCTCTGCCT CTGCCACCTC ATTTCAGCAA GGGCTCGCTC AGCAGTGGAA GCGTGCTCAT
  CTCCCTCTGG CTCCTGCCTG CCTAGGGACC AGTGCTCTCT GCACTGAAGC ATCTCCCCCT
  TGACCCCTGG CATGATGCTA AGTGTTGCCG TCTTTCATCT AGAGAAAGAA TTAACCCCAT
  AAAATGGCCA CAGTACAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45436206	mCV23229531	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss136044168	ENSMUSSNP4256495	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss321010296	CHEV_3_146086275	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30500103					SNP	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129066 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	582 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron