rs30499808 SNP Detail

Summary

• ID
  rs30499808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146887822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GTTGGCACAG CTGTGAGAGC
  Y
  GCGGGGGCCA CCGGGAGGGT AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45436490	mCV24071917	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136048013	ENSMUSSNP4026919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321011551	CHEV_3_146845031	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30499808					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146887822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	within coordinates
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	within coordinates
Rr587132	regulatory region 587132	787 bp distal
Rr587133	regulatory region 587133	286 bp distal
Rr587134	regulatory region 587134	528 bp proximal
Rr587135	regulatory region 587135	715 bp proximal
Rr587136	regulatory region 587136	1448 bp proximal