rs30499678 SNP Detail

Summary

• ID
  rs30499678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68947596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTACTTTTC TGTTGTGTGA TAAAACACCA TGACCAAGGC
  AATTCATAGA AGACAGTTTA TTTTGGCTTA CAGTTCCAGA GGGTTAGAGT TCATAATGAG
  R
  ACAGCACAGC AGCTGGAGCA GGAAGCTATG AGACTCTTTA AAGGCAGGCA TGAACCAGAG
  AGAACTAAAA GTGAGACAAG ACTTTCAACT CTCAAAGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45435401	mCV25211940	ABI	CRAMUS_MOUSE	f	SNP			A	G
ss135264655	ENSMUSSNP1030472	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320791789	CHEV_3_68844185	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30499678					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68947596 () rs orientation: forward

Symbol	Name	Function Class
Rr578115	regulatory region 578115	within coordinates
Rr578116	regulatory region 578116	1110 bp proximal
Rr578117	regulatory region 578117	1949 bp proximal
Trim59	tripartite motif-containing 59	Intron