rs30499469 SNP Detail

Summary

• ID
  rs30499469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58434487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCAGATA GTTATGAGGT GCTAGTTGCA ATCTTCTAAA
  CACTGCCAGA TAGTTGAGAT TGTTTTCTTT TGTTTAGATT ATTTATTTAT TTATTTATGC
  R
  TCTGTATCTG AGCGTGTGCA CAGGAGTACA GGCCTTAAGA GGCCCAGAAG AGGGTGTGGG
  CTTCCCTGGG GCTGGAGTTA GAGTTGTGAG CCTCACCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45434812	mCV24915795	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135207068	ENSMUSSNP201123	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320783123	CHEV_3_58330988	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30499469					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58434487 () rs orientation: forward

Symbol	Name	Function Class
6720482G16Rik	RIKEN cDNA 6720482G16 gene	within coordinates
Cpgi13201	CpG island 13201	794 bp distal
Eif2a	eukaryotic translation initiation factor 2A	Intron
Rr397681	regulatory region 397681	1012 bp downstream
Rr577247	regulatory region 577247	1235 bp distal
Rr577248	regulatory region 577248	1459 bp distal
Rr577249	regulatory region 577249	684 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1	1182 bp upstream
Tssr886	transcription start site region 886	1329 bp upstream
Tssr29207	transcription start site region 29207	1938 bp downstream
Tssr29208	transcription start site region 29208	1222 bp downstream
Tssr29209	transcription start site region 29209	1056 bp downstream
Tssr29210	transcription start site region 29210	1005 bp downstream
Tssr33349	transcription start site region 33349	1906 bp upstream
Tssr33350	transcription start site region 33350	1338 bp upstream
Tssr33351	transcription start site region 33351	1305 bp upstream
Tssr33352	transcription start site region 33352	1278 bp upstream
Tssr33353	transcription start site region 33353	1194 bp upstream
Tssr33354	transcription start site region 33354	1169 bp upstream