rs30499465 SNP Detail

Summary

• ID
  rs30499465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCTGCA GTCCCAGCTA
  CAGGAAGGTG GAGACATGAA GATTTGCTGG CTGGAGGTCT TAGCTGAATC CAGGAGCTGT
  AGGTTAGGTT AGACACCGTT TCTCAAAATC AAAGATGGGG AGCCACCTTC AGCCTCCACA
  CACTTGTGAA TGTACACGTA CAGACAGACA GCACATACGT GCACATGATC TTAGATATGT
  R
  TGCTTCTGTT CTGATGATAA ATAGATTACT TACTGAGCTA CAGAACTTCA AGGCCTTGAA
  AGAATTACAG GCAGGAGTTA CACAACTTAC AAAATGACTG GCAATACAAC TGAGAACATG
  ATGGAGCAGA GGGCTCACTT TCTCCCGCCT CTATTTTCTT TTTCTTTTCG TCGTCGTCGT
  CGTCGTCGTC TTCTTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss45434808	mCV25340012	ABI	CRAMUS_MOUSE	f	SNP	G	A				A
ss51649253	NES14653794	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs30499465					SNP	G	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649253	NES14653794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369416 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1145 bp distal
Rr585760	regulatory region 585760	1753 bp proximal
Tssr35804	transcription start site region 35804	342 bp upstream
Tssr35805	transcription start site region 35805	1427 bp downstream
Tssr35806	transcription start site region 35806	1438 bp downstream
Tssr35807	transcription start site region 35807	1458 bp downstream
Tssr35808	transcription start site region 35808	1499 bp downstream
Tssr35809	transcription start site region 35809	1536 bp downstream
Tssr35810	transcription start site region 35810	1561 bp downstream
Tssr35811	transcription start site region 35811	1628 bp downstream
Tssr35812	transcription start site region 35812	1647 bp downstream
Tssr35813	transcription start site region 35813	1688 bp downstream
Tssr35814	transcription start site region 35814	1712 bp downstream
Tssr35815	transcription start site region 35815	1743 bp downstream
Tssr35816	transcription start site region 35816	1760 bp downstream
Tssr35817	transcription start site region 35817	1830 bp downstream
Tssr35818	transcription start site region 35818	1858 bp downstream
Tssr35819	transcription start site region 35819	1890 bp downstream