rs30499333 SNP Detail

Summary

• ID
  rs30499333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19371578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTTCAA TCCCCAGATT
  CTCTATACAT TTGTATTTTC CATGGATATT TACCAAATAG CCACAAGTGT TTGGATATTC
  TCCTAGGTAT CTAAAATAAG CCAGAGAGTG GTCCCTGCCT GAATGACATC ACATAGTAAT
  GGGGGCATGT GTAAGTAAGT AAGTGTGGGA TTGTATAACT TGACATGGTG TTACTAGGGG
  Y
  TTTATTTACT CGGCTTTTTG TCACTAGCAC ATGACTATGA TAGAGAAGCT TACGAGGAGA
  ACAATGGAAA GATCTGTGTG GATTACAGTT TTGCTGTTTT CATTCCATGG TTGTTTAGAC
  TATTGTTGCG CCAGTGGCAA AGGAGCTTCA TATCCTATGA TATGAAGCTG CTCTCCCGAT
  TTGGGTTAAA AACTTGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45435117	mCV22547996	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134666645	ENSMUSSNP7134426	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320678405	CHEV_3_19217414	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30499333					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19371578 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	604 bp downstream
Rr573972	regulatory region 573972	1629 bp distal
Rr573973	regulatory region 573973	1720 bp distal
Rr573974	regulatory region 573974	1548 bp proximal