rs30498878 SNP Detail

Summary

• ID
  rs30498878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135392824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATCATT TCCATTACCT
  TATGACCTTG CTTGCCAATG TCTCTAAAGC TTTAAAATTA AAATAAAATT AAAAAGATGG
  TTTTCCATCT CATAAAATCC CCTTTTTGAA TGGAAGACTT CCTCTTTTTG TATTTTTTAG
  AGGGAACAGT AGGTAACTGT TAATTATTTA TACATTCTAA TAAACCATGA ATGCACCACA
  Y
  AAAATACTGT ACTCGGGGAG CAAACACTGT TTGGGGGGCT TCTCTCTTAC CAGAAGAACA
  GTGGGCTTTT CATTGCCTGT TGGATAAGGT TGCCTGTCAA AACAAGCTAG CGAAACAATT
  GAATGTGACT TAGCTGTTTA TCAGGTGTCA TCTCAGTACC AACAAAGTCC ATGCAAGGGT
  TGGAGGGGTC TCACAGCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45434311	mCV25339271	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135928509	ENSMUSSNP7193307	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30498878					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135392824 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	221 bp distal
Rr585766	regulatory region 585766	908 bp proximal
Tssr35822	transcription start site region 35822	822 bp downstream