rs30498138 SNP Detail

Summary

• ID
  rs30498138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54537845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAAAAT GGGTTAAGGC
  TATGGCTCTT CCTGAATCAA AGCTGTACTT TCGCAAATGA TTAGTATGAT CCTTGTAATT
  AAACACCCAG AGGCTATGCG ATGTGTTGGT TACGGGACCC CAGTAAAGCT TTTCTGGTAA
  ATTACTAACA GCCAGAGGAG CTCTGGTGCG CATCTACTCA AGTGCCCTTA AATGAATGCA
  R
  GCAGGACAGG TTTCTCTTCC TGCTAATTTG CATCCTTCCA CCGCACAGTT GTGAAAGCAG
  TGTCTGCTGC TAGGACAAGC TTGGCTTCCC TACAGCTTTA AATAAGTGTT AAGTATTTCG
  TCTTTGAAAA CTAGATCAGA AATTGTTGCT ATTGTTGTTG TTTGCTGTGC TAGGTGCCTC
  ACAAGAATTC CCCCACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46954928	NES10815746	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30498138					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954928	NES10815746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54537845 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	within coordinates